论文题目：A Simplified synthetic community rescues Astragalus mongholicus from root-rot disease by activating plant-induced systemic resistance
Background：Plant health and growth are negatively affected by pathogen invasion; however, plants can dynamically modulate their rhizosphere microbiome and adapt to such biotic stresses. Although plant-recruited protective microbes can be assembled into synthetic communities for application in the control of plant disease, rhizosphere microbial communities commonly contain some taxa at low abundance. The roles of low-abundance microbes in synthetic communities remain unclear; it is also unclear whether all the microbes enriched by plants can enhance host adaptation to the environment. Here, we assembled a synthetic community with a disease resistance function based on differential analysis of root-associated bacterial community composition. We further simplified the synthetic community and investigated the roles of low-abundance bacteria in the control ofAstragalus mongholicusroot rot disease by a simple synthetic community.
Results：Fusarium oxysporuminfection reduced bacterial Shannon diversity and significantly affected the bacterial community composition in the rhizosphere and roots ofAstragalus mongholicus. Under fungal pathogen challenge,Astragalus mongholicusrecruited some beneficial bacteria such asStenotrophomonas,Achromobacter,Pseudomonas, andFlavobacteriumto the rhizosphere and roots. We constructed a disease-resistant bacterial community containing 10 high- and three low-abundance bacteria enriched in diseased roots. After the joint selection of plants and pathogens, the complex synthetic community was further simplified into a four-species community composed of three high-abundance bacteria (Stenotrophomonassp.,Rhizobiumsp.,Ochrobactrumsp.) and one low-abundance bacterium (Advenellasp.). Notably, a simple community containing these four strains and a thirteen-species community had similar effects on the control root rot disease. Furthermore, the simple community protected plants via a synergistic effect of highly abundant bacteria inhibiting fungal pathogen growth and less abundant bacteria activating plant-induced systemic resistance.
Conclusions：Our findings suggest that bacteria with low abundance play an important role in synthetic communities and that only a few bacterial taxa enriched in diseased roots are associated with disease resistance. Therefore, the construction and simplification of synthetic communities found in the present study could be a strategy employed by plants to adapt to environmental stress.